PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011393.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 363aa    MW: 41779.8 Da    PI: 10.1457
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011393.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.77.9e-2377167189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  +f+n+YA++ GF vrk++ k++ ++g ++ r+fvCs+ g r++++ + t+++r++r+ tr++C  ++ ++ +  +++w v++++ +HnH+l
  Aco011393.1  77 DFFNKYARQKGFIVRKDNVKRHPETGMVVYRRFVCSRAGLRDKKHMNrTDRQRKERTLTRCECPVQFGIQFDPtTNRWFVHNFVDKHNHDL 167
                  6*****************************************999887889999*****************999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-2177167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
YRGTNDGLDM QPDGIEFYRW KQKTVCLDAK LIGNSLIMAS FVDRNIKVFG ARDGVELLVE  60
YEDIIQKTFS SENEGNDFFN KYARQKGFIV RKDNVKRHPE TGMVVYRRFV CSRAGLRDKK  120
HMNRTDRQRK ERTLTRCECP VQFGIQFDPT TNRWFVHNFV DKHNHDLDDV AVRRSRRKIK  180
DVQKSDTVLP EITGVRKHET VNVTGRENGG HENVGSALKD AKTSSPSDGR GGVSSSSEEM  240
TRFCDLMNLG KKVFHEASKT KEDYQEIMLY LENKLKQKEK RGLCLEVLTQ LESKLEGGIE  300
KNALSTKLLD PFSVKTKATP KKRPKPSNEI RRYKCRFCRC FGHTIRRCPL SQKDAMQLTA  360
IK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-16FAR1-related sequence 5